tsinfer
stable

Contents:

  • Introduction
  • Installation
  • Tutorial
  • Inference overview
  • API Documentation
  • Command line interface
  • File formats
  • Developer documentation
tsinfer
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Welcome to tsinfer’s documentation!¶

This is the documentation for tsinfer, a method for inferring correlated genealogies (a.k.a. tree sequence or ARGs) from genetic variation data.

Contents:¶

Contents:

  • Introduction
  • Installation
    • Binary packages
    • Installing from source
    • Potential issues
  • Tutorial
    • Toy example
    • Simulation example
    • Data example
  • Inference overview
    • Data requirements
    • Data model
    • Import samples data
    • Generate ancestors
    • Matching ancestors & samples
  • API Documentation
    • File formats
    • Running inference
    • Exceptions
  • Command line interface
    • Argument details
  • File formats
    • Samples File
    • Ancestors File
    • Tree sequences
  • Developer documentation

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2018, Jerome Kelleher Revision 69056f60.

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