Index

A

add_ancestor() (tsinfer.AncestorData method) add_individual() (tsinfer.SampleData method) add_population() (tsinfer.SampleData method) add_provenance() (tsinfer.AncestorData method) (tsinfer.SampleData method) add_site() (tsinfer.SampleData method)

AncestorData (class in tsinfer) ancestors() (tsinfer.AncestorData method) ancestors_length (tsinfer.AncestorData attribute) arrays() (tsinfer.AncestorData method) (tsinfer.SampleData method) assert_data_equal() (tsinfer.SampleData method) augment_ancestors() (in module tsinfer)

C

clear_provenances() (tsinfer.AncestorData method) (tsinfer.SampleData method) close() (tsinfer.AncestorData method) (tsinfer.SampleData method)

copy() (tsinfer.AncestorData method) (tsinfer.SampleData method)

D

data_equal() (tsinfer.AncestorData method) (tsinfer.SampleData method)

F

file_size (tsinfer.AncestorData attribute) (tsinfer.SampleData attribute) FileFormatError

finalise() (tsinfer.AncestorData method) (tsinfer.SampleData method) from_tree_sequence() (tsinfer.SampleData class method)

G

generate_ancestors() (in module tsinfer)

H

haplotypes() (tsinfer.SampleData method)

I

infer() (in module tsinfer) info (tsinfer.AncestorData attribute) (tsinfer.SampleData attribute)

insert_proxy_samples() (tsinfer.AncestorData method)

L

load() (in module tsinfer)

M

match_ancestors() (in module tsinfer) match_samples() (in module tsinfer)

merge() (tsinfer.SampleData method) min_site_times() (tsinfer.SampleData method)

N

num_alleles() (tsinfer.SampleData method)

P

provenances() (tsinfer.AncestorData method) (tsinfer.SampleData method)

R

record_provenance() (tsinfer.AncestorData method) (tsinfer.SampleData method)

S

SampleData (class in tsinfer) set_inference_sites() (tsinfer.AncestorData method)

sites() (tsinfer.SampleData method) subset() (tsinfer.SampleData method)

T

truncate_ancestors() (tsinfer.AncestorData method)

V

variants() (tsinfer.SampleData method)