tsinfer
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Contents:
Introduction
Installation
Tutorial
Inference overview
API Documentation
Command line interface
File formats
Developer documentation
tsinfer
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Index
A
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C
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D
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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T
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V
A
add_ancestor() (tsinfer.AncestorData method)
add_individual() (tsinfer.SampleData method)
add_population() (tsinfer.SampleData method)
add_provenance() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
add_site() (tsinfer.SampleData method)
ancestor() (tsinfer.AncestorData method)
AncestorData (class in tsinfer)
ancestors() (tsinfer.AncestorData method)
ancestors_length (tsinfer.AncestorData property)
arrays() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
assert_data_equal() (tsinfer.SampleData method)
augment_ancestors() (in module tsinfer)
C
clear_provenances() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
close() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
copy() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
D
data_equal() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
F
file_size (tsinfer.AncestorData property)
(tsinfer.SampleData property)
FileFormatError
finalise() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
from_tree_sequence() (tsinfer.SampleData class method)
G
generate_ancestors() (in module tsinfer)
H
haplotypes() (tsinfer.SampleData method)
I
infer() (in module tsinfer)
info (tsinfer.AncestorData property)
(tsinfer.SampleData property)
insert_proxy_samples() (tsinfer.AncestorData method)
L
load() (in module tsinfer)
M
match_ancestors() (in module tsinfer)
match_samples() (in module tsinfer)
merge() (tsinfer.SampleData method)
min_site_times() (tsinfer.SampleData method)
N
num_alleles() (tsinfer.SampleData method)
P
provenances() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
R
record_provenance() (tsinfer.AncestorData method)
(tsinfer.SampleData method)
S
SampleData (class in tsinfer)
set_inference_sites() (tsinfer.AncestorData method)
sites() (tsinfer.SampleData method)
subset() (tsinfer.SampleData method)
T
truncate_ancestors() (tsinfer.AncestorData method)
V
variants() (tsinfer.SampleData method)
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